miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|25507190|gb|BU253200.1|BU253200 GCGATGGCGGCCTCCAGGTCCTTCCGGCGGCGCAGGTAGGAACCCGAGGAGGACGAGGAGGACGAGCAGCTGGCCGAGGA
GGTCAGGTTAAAACTCGAGGAAGCCAAAGAAGTGCAGAGCCTCAGGAAGAGACCCAACGGGGTGAGTGCTGCAGCTCTGC
TTGTGGGAGAGAAGTTGCAAGAAGAAGCAACGCTTGTGGATGACCCATTTAAGATAAAATCTGGGGGGATGGTGGACATG
AAGAAACTGAAAGAACGAGGCAAGGACAGGATTAATGAAGAGGAAGATCTGAACTTGGGAACTTCCTTCTCAGCTGAAAC
CAACAGGCGGGATGAGGATGCTGACATGATGAAGTACATTGAGACAGAGCTGAAGAAGAGAAAAGGAATCGTGGAGAATG
AAGAACAGAAGGTGAAGCTTAAGAACGCTGAGGACCTCTTCTTGTATGAGCTGCCAGAGAACATCCGTGTCTCCTCGGCC
AAGAAGACTGAAGAGATGCTGTCCAACCAGATGCTGAGTGGCATTCCTGAAGTGGACCTGGGAATTGATGCAAAAATAAA
AAACATAATCTCAACTGAAGAGGCCAAGGCCAAAGCTGCTGGCAGAGCAGCAGAACAAAAAGAAAGACAGCGAAACTTCC
TTTGTTCCCACAAACATGGCTGTTAACTATGTCCAGCACAACAGATTTATCACGAGGAGCTAAATGCACCGGTGAGAAGG
ACTAAGAAG




Most similar to sp|Q9NZ63|CI078_HUMAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9NZ63|CI078_HUMAN Uncharacterized protein C9orf78 OS=Homo
           sapiens GN=C9orf78 PE=1 SV=1
          Length = 289

 Score =  294 bits (752), Expect = 5e-79
 Identities = 158/214 (73%), Positives = 171/214 (79%)
 Frame = +1

Query: 88  LKLEEAKEVQSLRKRPNGVSAAALLVGEKLQEEATLVDDPFKIKSGGMVDMKKLKERGKD 267
           LKLEE +EVQ+LRKRPNGVSA ALLVGEK+QEE TLVDDPF++K+GGMVDMKKLKERGKD
Sbjct: 29  LKLEETREVQNLRKRPNGVSAVALLVGEKVQEETTLVDDPFQMKTGGMVDMKKLKERGKD 88

Query: 268 RINEEEDLNLGTSFSAETNRRDEDADMMKYIETELKKRKGIVENEEQKVKLKNAEDLFLY 447
           +I+EEEDL+LGTSFSAETNRRDEDADMMKYIETELKKRKGIVE+EEQKVK KNAED  LY
Sbjct: 89  KISEEEDLHLGTSFSAETNRRDEDADMMKYIETELKKRKGIVEHEEQKVKPKNAEDC-LY 147

Query: 448 ELPENIRVSSAKKTEEMLSNQMLSGIPEVDLGIDAKIKNIISTXXXXXXXXXXXXXXXXX 627
           ELPENIRVSSAKKTEEMLSNQMLSGIPEVDLGIDAKIKNIIST                 
Sbjct: 148 ELPENIRVSSAKKTEEMLSNQMLSGIPEVDLGIDAKIKNIISTEDAKARLLAEQQNKKKD 207

Query: 628 XXNFLCSHKHGC*LCPAQQIYHEELNAPVRRTKK 729
                             + YHEELNAP+RR K+
Sbjct: 208 SETSFVPTNMAVNYVQHNRFYHEELNAPIRRNKE 241